FICHIER AIDE

Recherche de motifs signature
Interpro
http://www.ebi.ac.uk/interpro/

Conversion de séquences
Seqret (EMBOSS) - biosequence conversion tool
http://www.ebi.ac.uk/Tools/sfc/emboss_seqret/

Recherche de phase de lecture ouverte
ORF Finder / NCBI
http://www.ncbi.nlm.nih.gov/gorf/gorf.html

Traduction ARN ---> proteine
Translate tool / ExPASy
http://expasy.org/tools/dna.html

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RESULATS POUR LES 9 PROTEINES
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Protéine 1
dehydrin - Triticum turgidum subsp. durum

>gi|121489514|emb|AM180930.1| Triticum turgidum subsp. durum partial mRNA for dehydrin 2 (DHN15.2 gene)
TCGACGTGTACGGCAACCCGTTTCTGCTAGCCGGCGGCGTGGGGGGAGCGCACGCCGCTCCCGGCACCGG
CGGGCAGTTCCAGGCCCACAGGGGAGAGCACAAGACCGGTGGGATCCTGCATCGCTCCGGCAGCTCCAGC
TCCAGCTCGTCTTCCGAGGACGACGGCATGGGCGGGAGGAGAAAGAAGGGCATGAAGGAGAAGATCAAGG
AGAAGCTCCCCGGTGGCCACAAGGACAACCAGCAGCATATGGCGACGGGGACAGGGACTGGAGGAGCCTA
CGGGCCGGGAACTGGGACTGGTGGAGCCTACGGGCAGCAAGGCCACACAGGAATGGCCGGCGCCGGCACT
GGCACGGGCGAGAAGAAGGGGATCATGGACAAGATCAAGGAGAAGCTCCCC

>gi|121489515|emb|CAJ56060.1| dehydrin 2 [Triticum turgidum subsp. durum]
DVYGNPFLLAGGVGGAHAAPGTGGQFQAHRGEHKTGGILHRSGSSSSSSSSEDDGMGGRRKKGMKEKIKE
KLPGGHKDNQQHMATGTGTGGAYGPGTGTGGAYGQQGHTGMAGAGTGTGEKKGIMDKIKEKLP

>AM180930  Triticum turgidum TRADUITE à la main
DVYGNPFLLAGGVGGAHAAPGTGGQFQAHRGEHKTGGILHRSGSSSSSSSSEDDGMGGRR
KKGMKEKIKEKLPGGHKDNQQHMATGTGTGGAYGPGTGTGGAYGQQGHTGMAGAGTGTGE
KKGIMDKIKEKLP
Protéine 2
dehydrin 7  - Hordeum vulgare

>gi|4105112|gb|AF043092.1|AF043092 Hordeum vulgare dehydrin 7 (dhn7) gene, complete cds
TTTTTTAATGAGCAGGGTTATGATTTTTCAATCCATTGTATATTTTCATGGGCACAGAAATGAATTTGAT
ATGCTCGACCATGTAACCCGAACGCGCCTACTTTTAATAATAGGATACCTTCGGTCTATATAGTTCCAAT
TTTGTTCCATGCCGACACTTTCTAGTTGTCATTTTCCTAAGCAAACAGGACGACTTTTGGAAGCGGAAAT
AAGTACCCCCTGTGCTGTGTGTCATCACCTCTCCGAGAACAAGCTGAGACGTGGCAACCCGAACGCGCCC
AGTAGCTGCACACGTTCGGCCTCTCTTTATGGGCTAGTCATCACTCATCACTCATCAGTCACCGGCAACC
CACTCACGCGAGCACACGTAGCGCCTCCGACGACGATCCTATCCCGTCGATCGGCTATAAATTGTGCCTC
CTGCTGCACCTGCTTACACAACACAGCCACCAGTTGCGCAGCCAAGTGAGGAAGACAACCCACCAGATTT
CTGAGAGAACCAAGAGCAGCACCTGTGCAAGATGGAGTACCAGGGACAGCAGCAGCACGGCCAGGCGACC
AACCGCGTCGACGAGTACGGTAACCCGGTTGCCGGACACGGCGGTGGCACCGGCATGGGCGCGCACGGCG
GCGTCGGCACCGGTGCGGCCGCTGGTGGTCATTTCCAGCCGACGAGGAAGGAACACAAGGCCGGCGGGAT
CCTGCAGCGCTCCGGCAGCTCAAGCTCCAGCTCGGTGCGTATATAGGCTTTACTTACTTCTTACCAACAC
TTGCATAGTGGCATTTTCCCGTTTAGACTTTGAATGAGAAAGCATCAACGCCTGAATTTTCTCGTTGGTG
GTGATAGTCTGAGGACGATGGCATGGGCGGGAGGAGGAAGAAGGGTATCAAGGATAAGATCAAGGAGAAG
CTCCCTGGTGGCCACGGTGACCAGCAGCACGCCGCCGGCACCTACGGACAGCAGGGTATTGGCATGGCCG
GCACCGGCGGCACCTATGGGCAGCAGGGTCACACTGGGATGACCGGCACGGGGGCAACTGGCACCATGGC
CACAGGCGGTACCTACGGGCAGCCGGGACACACCGGTATGACTGGTACTGGGACGCATGGCACCGACGGC
ACCGGCGAAAAGAAGGGCATCATGGACAAAATCAAGGAGAAGCTGCCCGGACAGCACTGAGCCCGGCCCG
CGGCCCCTACTTGTGAAAGTTAAGAGGTGCCGGTCTACGTACCCACCTCTGCAGAAAAATAAGATGAAGA
TACAGTAAAACTTTCCGAAATGAAGTGAGCTTTAGTTCACTCGTGATATCTGAGTTCTCGGTTTTATGGA
CTTGAATATGGCTTCTTGTATGGACCCGGGACGTTTTGTGCTCTGTACTTTTATGTGTGAATTTTCTTTT
GGTTGAACTGTGTATCTGTTATGTATGTATATCATGATATAATTAATACTACAATATATTTTGCCCTTCT
ACTTGCGCTTTCTGTGCATTGCATGATTTTAAGTTGGGTAGTTTTGTCCACGTGGCATATTGTACATTGC
ATTTGAATTAGTTTTTGTGAGAGTTTAGAAGCATTCTATATAGTGTTTTGACGATTTTGAAGCATCCAAA
AGTAGGGTCCACCAAACATGGTTTAGTACAAAGCTACAACTTTGTATTAAACCAACATCAATTAATACAG
ATCAAAACAGCCGCAAAAAAGAAAAAAAATATAGATCAAAGGGACTTACAAAGCTACTTCTCATAAATTT
GGTTTTGATAGTAAGTTAGATGATGAGCACACCACATCCAAAAAATTACTTTCCATAAATTTATACTAAA
ATAATCATCATATAATACAACATATAAATGCATATAAAATATTCAAGATTGATAATATAATGGTATGAAA
CAATTTAAAATTATAGATATGTTGTATTCGAGATTGATAATATAATGGTATGAAACAATTTAAAATTATA
GATATGTTGAAGACGTATAACTTCCCTGCGTCGGTTTGTTCGAATGAGAGAGTTTATTACTCCTCGAGGC
ACAAGATCTAGGTGACCAAGGTTCCCACAGGAGCTTTCTTTTATTGTGTGCTCCGGGTAAGGGTGTGAAG
TGACCAAGGTGGTCAAGTTTCTCCGGA

>gi|4105113|gb|AAD02258.1| dehydrin 7 [Hordeum vulgare]
MEYQGQQQHGQATNRVDEYGNPVAGHGGGTGMGAHGGVGTGAAAGGHFQPTRKEHKAGGILQRSGSSSSS
SSEDDGMGGRRKKGIKDKIKEKLPGGHGDQQHAAGTYGQQGIGMAGTGGTYGQQGHTGMTGTGATGTMAT
GGTYGQPGHTGMTGTGTHGTDGTGEKKGIMDKIKEKLPGQH

> AAD02258 Hordeum vulgare traduite à la main
SEDDGMGGRRKKGIKDKIKEKLPGGHGDQQHAAGTYGQQGIGMAGTGGTYGQQGHTGMTG
TGATGTMATGGTYGQPGHTGMTGTGTHGTDGTGEKKGIMDKIKEKLPGQH

===============================================================
Protéine 3
dehydrin - Zea mays

>gi|18963|emb|X15290.1| Zea mays mRNA for dehydrin (dhn1 gene)
NNNNCAACGACGAGCCACATCGAGAACACGATCGAGCACACAAGCACGAAGACTCGTTTAGGAGAAACCA
CAAACCACCAAGCCGTGAAAGCATCATGGAGTACGGTCAGCAGGGGCAGCACGGCCACGGCGCCACGGGC
CATGTCGACCAGTACGGCAACCCAGTCGGCGGCGTCGAGCACGGCACCGGCGGCATGAGGCACGGCACGG
GAACCGGCGGCATGGGCCAGCTGGGTGAGCACGGCGGCGCTGGCATGGGTGGCGGGCAGTTCCAGCCTGC
GAGGGAGGAGCACAAGACCGGCGGCATCCTGCATCGCTCCGGCAGCTCCAGCTCCAGCTCGTCGGAGGAC
GACGGCATGGGCGGAAGGAGGAAGAAGGGAATCAAGGAGAAGATCAAGGAGAAGCTGCCCGGAGGCCACA
AGGACGACCAGCACGCCACGGCGACGACCGGCGGCGCCTACGGGCAGCAGGGACACACCGGCAGCGCCTA
CGGGCAGCAGGGACACACCGGCGGCGCCTACGCCACCGGCACCGAGGGCACCGGCGAGAAGAAAGGCATT
ATGGACAAGATCAAAGAGAAGCTGCCCGGACAGCACTGAGCGCCCATAAGTACAGTGGCTGTGCTGGCGC
GTCAAAGCCGTAATGTTCAGTGTTCCATAGATAATAAGATAAATCCATGAATAAGTGTCCCTACCCTTGA
TCATGTGACAGGGACAGGGACAGTTTCCTGTACTTGTGGGGTGAATTTGTACGTGTGATACGGTAACTGG
GTCCGTGTACTGTTTATGCTACGTTTTCCTTCCTAAAAGTACGTATATATATACAGCACTTGCGAGTGGC
TTTACTTCAGTG

>gi|18964|emb|CAA33364.1| dehydrin [Zea mays]
MEYGQQGQHGHGATGHVDQYGNPVGGVEHGTGGMRHGTGTGGMGQLGEHGGAGMGGGQFQPAREEHKTGG
ILHRSGSSSSSSSEDDGMGGRRKKGIKEKIKEKLPGGHKDDQHATATTGGAYGQQGHTGSAYGQQGHTGG
AYATGTEGTGEKKGIMDKIKEKLPGQH

>CAA33364 Zea mays traduite à la main
NDEPHREHDRAHKHEDSFRRNHKPPSRESIMEYGQQGQHGHGATGHVDQYGNPVGGVEHG
TGGMRHGTGTGGMGQLGEHGGAGMGGGQFQPAREEHKTGGILHRSGSSSSSSSEDDGMGG
RRKKGIKEKIKEKLPGGHKDDQHATATTGGAYGQQGHTGSAYGQQGHTGGAYATGTEGTG
EKKGIMDKIKEKLPGQH

===============================================================
Protéine 4
dehydrin 1 - Aegilops umbellulata

>gi|121489504|emb|AM180925.1| Aegilops umbellulata mRNA for dehydrin 1 (dhn1 gene)
ATGGAGTTCCAAGGGCAGCACGACAACCCCGCCAACCGAGTCGACGAGTACGGCAACCCGTTCCCGCTGG
CCGGCGGCGTGGGGGGAGCGCACGCCGCTCCCGGCACCGGCGGGCAGTTCCAGGCCCACAGGGGAGAGCA
CAAGACCGGTGGGATCCTGCATCGCTCCGGCAGCTCCAGCTCAAGCTCGTCTTCCGAGGACGACGGCATG
GGCGGGAGGAGGAAGAAGGGCATGAAAGAGAAGATCAAGGAGAAGCTCCCCGGCGGCCACAAGGACAACC
AGCAGCACACGGCGACTGGAACGGGGACTGGAGGAGCCTACGGGCCGGGGACTGGAACTGGTGGAGCCTA
CGGGCAGCAAGGCCACGCAGGAATGGCCGGCGCAGGCACTGGCACGGGCGAGAAGAAGGGAATCATGGAC
AAGATCAAGGAGAAGCTGCCGGGACAGCACTGA

>gi|121489505|emb|CAJ56055.1| dehydrin 1 [Aegilops umbellulata]
MEFQGQHDNPANRVDEYGNPFPLAGGVGGAHAAPGTGGQFQAHRGEHKTGGILHRSGSSSSSSSSEDDGM
GGRRKKGMKEKIKEKLPGGHKDNQQHTATGTGTGGAYGPGTGTGGAYGQQGHAGMAGAGTGTGEKKGIMD
KIKEKLPGQH

> CAJ56055 Aegilops umbellulata traduite à la main
MEFQGQHDNPANRVDEYGNPFPLAGGVGGAHAAPGTGGQFQAHRGEHKTGGILHRSGSSS
SSSSSEDDGMGGRRKKGMKEKIKEKLPGGHKDNQQHTATGTGTGGAYGPGTGTGGAYGQQ
GHAGMAGAGTGTGEKKGIMDKIKEKLPGQH

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Protéine 5
RAB21 protein - Oryza sativa (indica cultivar-group)

>gi|20316|emb|Y00842.1| Rice rab21 gene for water-stress inducible protein RAB21
CTGCAGAGAGGATGACCCTTGTCACCACCGTCATGTACGAGGCTGCTTCACCACTGCCTCACTGCCACCA
GCGTCTCCCGCCGCGTGCAATACAAGAAGAAACATCGAACGGTCATATAAGGTAAGACCCACTACCGATT
TAACCTATCATTCCCACAATCTAATCCACTTATTTCTCTTCCCATGATCTTATCCTCTCATTTCTCCTCA
CTACTTTTGCATTTGTAGGAAACACAATGACACCGTCGAAGAAAGCTGGTGGAGCACCGTAGCCAGCAAT
CACCAAAACACAGAGGGGAGGAGGTCGGCAGCGGCCATGCGGACGGCGATGAGACAACGCGACGCAAAGA
GGGAGGAGGACGTTGGCGATCATGCTGGTGTTGGCGGAGGAGGTCACTGGCCATGCGAATGACAGCGGGG
CAGCGCAACACAAAAAGGGGGGAGGATGCCGGCGACCACGCTAGTACCATGAAGCAAGATGATGTGAAAG
GGAGGACCGGACGAGGGTTGGACCTCTGCCGCCGACGTGAAGAGCGTGATGTGTAGAAGGAGATGTTAGA
CCAGATGCCGACGCAACTTAGCCCTGCAAGTCACCCGACTGCATATCGCTGCTTGCCCTCGTCCTCATGT
ACACAATCAGCTTGCTTATCTCTCCATACTTGTCGTTTGTTTCCCGTGGCCGAAATAGAAGAAGACAGAG
GTGGGTTTTGTTGGAGAGTTTTAGTGGTATTGTAGGCCTATTTGTAATTTTGTTGTACTTTATTGTATTA
ATCAATAAAGGTGTTTCATTCTATTTTGACTCAATGTTGAATCCATTGATCTCTTGGTGTTGCACTCAGT
ATGTTAGAATATTCATTCCGTTGAAACAATCTTGGTTAAGGGTTGGAACATTTTTATCTGTTCGGTGAAA
CATCCGTAATATTTTCGTTGAAACAATTTTTATCCGACAGCACCGTCCAACAATTTACACCAATTTGGAC
GTGTGATACATAGCAGTCCCCAAGTGAAACTGACCACCAGTTGAAAGGTATACAAAGTGAACTTATTCAT
CTAAAAGACCGCAGAGATGGGCCGTGGCCGTGGCTGCGAAACGACAGCGTTCAGGCCCATGAGCCATTTA
TTTTTTAAAAAAATATTTCAACAAAAAAGAGAACGGATAAAATCCATCGAAAAAAAAAAACTTTCCTACG
CATCCTCTCCTATCTCCATCCACGGCGAGCACTCATCCAAACCGTCCATCCACGCGCACAGTACACACAC
ATAGTTATCGTCTCTCCCCCCGATGAGTCACCACCCGTGTCTTCGAGAAACGCCTCGCCCGACACCGTAC
GTGCGCCACCGCCGCGCCTGCCGCCTGGACACGTCCGGCTCCTCTCCCGCCGCGCTGGCCACCGTCCACC
GGCTCCCGCACACGTCTCCCTGTCTCCCTCCACCCATGCCGTGGCAATCGAGCTCATCTCCTCGCCTCCT
CCGGCTTATAAATGGCGGCCACCACCTTCACCTGCTTGCACACCACAGCAAGAGCTAAGTGAGCTAGCCA
CTGATCAGAAGAACACCTCGATCTCTGAGAGTGTTTTTTCAGCTTTAGCTTAAGCAGGATGGAGCACCAG
GGGCAGCACGGCCACGTGACCAGCCGCGTCGACGAGTACGGCAACCCGGTCGGCACCGGCGCCGGACACG
CGCAGATGGGCACCGCCGGCATGGGGACGCACGGCACCGCCGGCACCGGCCGCCAGTTCCAGCCGATGAG
GGAGGAGCACAAGACCGGCGGCGTCCTGCAACGCTCCGGCAGCTCCAGCTCAAGCTCGGTACAACATTTT
GACCCCCAATTCTTTACCCCCCACTAAAACCTTGCGTACAATTCGTTGAAAATTTTAATGTCTTGTGACA
GTCTGAGGATGATGGAATGGGAGGGAGGAGGAAGAAGGGGATCAAGGAGAAGATCAAGGAGAAGCTCCCC
GGCGGCAACAAGGGCGAGCAGCAGCATGCCATGGGCGGCACCGGCACCGGCACCGGCACCGGCACCGGAA
CCGGCGGCGCCTACGGGCAGCAGGGCCACGGCACCGGGATGACCACCGGCACCACCGGCGCACACGGCAC
CACCACCACCGACACCGGCGAGAAGAAGGGCATCATGGACAAGATCAAGGAGAAGCTGCCCGGCCAGCAC
TGAGCTCGACACACCACCACACCATGTGTGCCTGCGCCGGACGGCCGCCACGTCACCTTCCTGAATAATA
AGATGAGCTAGCCGAGCGCAATAAAAGGAAAAAAAAATGTTACTGTCGTGTGATGAGTGTGAATGTGTGA
TGGCGTTCTCCAGTACGGACCGTGTCTGCGTGTTGTTTGTACTGTGAAAGTACGCTGTGTATGTACGTCG
TATGTGTACAATTCCGCTTATACTGTTGTTGAAATACGTATAAATATGTGTACATTATACGGTGTATATC
TCATCGTGCATATGTACACAACGTTTTGGTGATCGTTATAATGTTCATTTTTTTCCTTATTCTGATCAAT
CTGGATCATAGGAGCTC

>gi|295826|emb|CAA68765.1| RAB21 protein [Oryza sativa (indica cultivar-group)]
MEHQGQHGHVTSRVDEYGNPVGTGAGHAQMGTAGMGTHGTAGTGRQFQPMREEHKTGGVLQRSGSSSSSS
SEDDGMGGRRKKGIKEKIKEKLPGGNKGEQQHAMGGTGTGTGTGTGTGGAYGQQGHGTGMTTGTTGAHGT
TTTDTGEKKGIMDKIKEKLPGQH

>CAA68765 Oryza sativa  traduite à la main
QSEDDGMGGRRKKGIKEKIKEKLPGGNKGEQQHAMGGTGTGTGTGTGTGGAYGQQGHGTG
MTTGTTGAHGTTTTDTGEKKGIMDKIKEKLPGQH

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Protéine 6
dehydrin [Sorghum bicolor]

>gi|1488311|gb|U63831.1|SBU63831 Sorghum bicolor dehydrin (DHN2) mRNA, partial cds
CGCTGGCATGGGTGGCGGGCAGTTCCAGCCAGCGAGGGAGGAGCATAAGACCGGCGGCATCCTGCATCGC
TCCGGCAGCTCCAGCTCCAGCTCGTCTGAGGACGACGGCATGGGCGGAAGGAGGAAGAAGGGAATCAAGG
AGAAGATCAAGGAGAAGCTGCCCGGAGGCCACAAGGACAACCAGCACGCCACGGCGACCGGCGGCGGCGC
CGCCTACGGGCAGCAAGAACACACCGGCGCCGGAACCTACGGTACCGAGGGCACCGGCGAGAAGAAAGGC
ATCATGGACAAGATCAAGGAGAAGCTGCCCGGACAGCACTAATCGTCCGTGGCTGCGTTGGCTCTCTCTG
GCGTGTGAAAGCCGTACTTAATCACTGTCGTCATAATAGGATGATGAGTCCATGAATAAGTGTCCCTTAT
GTCGTGACATGCACGGGGACAGTTTATACTTTTGTTGTGTGGTGTGACTTGCGAGTGAGAGTTTGTACGT
ACGAAACTTGGGTCTGTGTACTGTTTACGCTGCATCGTTTGTCTTCCTGAAAGTATATA

>gi|1488312|gb|AAB05927.1| dehydrin [Sorghum bicolor]
AGMGGGQFQPAREEHKTGGILHRSGSSSSSSSEDDGMGGRRKKGIKEKIKEKLPGGHKDNQHATATGGGA
AYGQQEHTGAGTYGTEGTGEKKGIMDKIKEKLPGQH

> AAB05927 Sorghum bicolor traduite à la main
AGMGGGQFQPAREEHKTGGILHRSGSSSSSSSEDDGMGGRRKKGIKEKIKEKLPGGHKDN
QHATATGGGAAYGQQEHTGAGTYGTEGTGEKKGIMDKIKEKLPGQH

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Protéine 7
dehydrin - Brassica juncea

>gi|37547532|gb|AY130998.1| Brassica juncea dehydrin (DHN1) mRNA, complete cds
ATGGCGGATTTGAAAGACGAAAGAGGAAACCCAATCCATCTAACCGACGAACACGGAAACCCGGTCCAGC
TCACTGATGAGTTCGGTAACCCCATGCACATAACCGGTGTCGCCAGCTCTGCCCCTCAGTACAAGGAGAG
TGTTACTGGTAACATTCAAGAGTATCGAACCGCAGCACCACCAGCAGGAGTCGCTGCAGGCACCGGTGTA
GCTGCCACCACGGCCGCAGGAGTCGCTACTGGTGAAACTACCACGGGGCAGCAGCAACACCATGAATCGC
TTGGAGAGCACCTTCGTCGCTCAGGAAGTTCATCAAGCTCTAGCTCGGAGGACGATGGACAAGGAGGAAG
GAGAAAGAAGGGCATGAAAGACAAAATCAAAGAGAAGTTAAGTGGTGGTAAGCACAAGGATGAACAAACC
CCCAGCACTGCCACAACTACTGGACCCACCACTACCACTGGAGCCGCCGCCGCCGACCAACACCATGAGA
AGAAGGGCATTCTCGAGAAGATCAAGGAGAAACTCCCCGGCCACCACAACCACCACCCGTGA

>gi|37547533|gb|AAN08718.1| dehydrin [Brassica juncea]
MADLKDERGNPIHLTDEHGNPVQLTDEFGNPMHITGVASSAPQYKESVTGNIQEYRTAAPPAGVAAGTGV
AATTAAGVATGETTTGQQQHHESLGEHLRRSGSSSSSSSEDDGQGGRRKKGMKDKIKEKLSGGKHKDEQT
PSTATTTGPTTTTGAAAADQHHEKKGILEKIKEKLPGHHNHHP

>AAN08718 Brassica juncea traduite à la main
MADLKDERGNPIHLTDEHGNPVQLTDEFGNPMHITGVASSAPQYKESVTGNIQEYRTAAP
PAGVAAGTGVAATTAAGVATGETTTGQQQHHESLGEHLRRSGSSSSSSSEDDGQGGRRKK
GMKDKIKEKLSGGKHKDEQTPSTATTTGPTTTTGAAAADQHHEKKGILEKIKEKLPGHHN
HHP
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Protéine 8
dehydrin [Nicotiana tabacum]

>gi|46020011|dbj|AB049336.1| Nicotiana tabacum NtERD10B mRNA for dehydrin, complete cds
CACGAGGTGTAGTTCAGATTTTAATTAGTTTTGCTCTCTGTTCGTGAAGAAATGTCGCACTACGACAACC
AATTTAGTGCAGGCCAGGCCTTGCAGACGGACGAATACGGCAATCCCATTCGTCAAACCGACGAATATGG
GAACCCAGTCCATCACACTGGAGGTACCATGGGAGACTATGGAACCACCGGAACAGGAGGTGCCTATGGA
ACTCACGCTGGCGGTGGCGCCGGCCACACCACTGGCATACTTGGTGGGGAACACCGTCCCGGCCATGAGC
ACGGTACTCTCGGTGGCATGCTCCACCGTTCTGGAAGCTCCAGCTCCAGCTCTAGCTCTTCGGAGGATGA
TGGACAAGGCGGAAGAAGGAAGAAGAAAGGGATGAAGGAGAAGATTAAGGAGAAATTGCCAGGAGGTCAC
AAAGACGATCAGACTCATTCAACTGCAACAACTACGACTACCGGTTATGGTATGGAAGGGGAGCATCATC
ATGAGAAGAAGGGAATCATGGACAAGATTAAGGAGAAGCTTCCTGGCCACCATGGACCTGGCCACCACTA
GAAAAGCTGCTGCCAAACAATAAAATCCCTTTAAAGATACATGTAAAATGTTGGTCTAATACTTTTTGTA
TTTCAACGTTGTTTCTAGTTATTAGTCTTTTGAGTTTTGAGAGCGTGGCGTTTATTTGAATAAAGCCATG
TTAGACTCTTAAGTAGTGGAAGCATAGTCTTACATGTAATAAGTACGTTGTAATGTTGCAAGCACGTTGT
GTCGTGTAAAAAAAAAAAAAAAAAAA

>gi|46020012|dbj|BAD13498.1| dehydrin [Nicotiana tabacum]
MSHYDNQFSAGQALQTDEYGNPIRQTDEYGNPVHHTGGTMGDYGTTGTGGAYGTHAGGGAGHTTGILGGE
HRPGHEHGTLGGMLHRSGSSSSSSSSSEDDGQGGRRKKKGMKEKIKEKLPGGHKDDQTHSTATTTTTGYG
MEGEHHHEKKGIMDKIKEKLPGHHGPGHH

>BAD13498 Nicotiana tabacum traduite à la main
LVLLSVREEMSHYDNQFSAGQALQTDEYGNPIRQTDEYGNPVHHTGGTMGDYGTTGTGGA
YGTHAGGGAGHTTGILGGEHRPGHEHGTLGGMLHRSGSSSSSSSSSEDDGQGGRRKKKGM
KEKIKEKLPGGHKDDQTHSTATTTTTGYGMEGEHHHEKKGIMDKIKEKLPGHHGPGHH

===============================================================
Protéine 9
dehydrin protein [Daucus carota]

>gi|57506539|dbj|AB105039.1| Daucus carota CAISE1 mRNA for dehydrin protein, complete cds
CTGCAAGATATCGAACAAACCACTAGTTATAATACTTGAAGAGCTTCTTAGAGTTTATTGTGTTTGAAAT
GGCAAGCTACGGAGAAGGAGGATACGGAGGACAGAAGCATCATGGAAGTGATGAGTATGGCAATCCGGTT
CGTCAGACAGACGAGTATGGGAACCCGGTTCAGCACACCACTGGGGGAACCGGCATGCATGGCACTGGTG
CTACGACGGGTGCACATGGCGTTGGGCTCTCCACTGGCAGTGATGGGCAGCCGCGGCTTAACCGCTCCGG
GAGCTCCAGCTCCAGCTCATCTGAGGACGATGGAATGGGAGGAAGGAGGAAGAAAGTTGGGATGAAGCAG
AAGATTAAGGGGATGTTGCCCGGAGGACACAAGGAGGATCAGCAGACTCAAACGACGACTCCCGTTATGG
GAGGTTCGTATGGAGCAACTGGTACCGGAGAGCAGCCTGAGGAGAAGAAAGGAATTATGGATAAGATCAA
GGACAAGCTGCCCGGTGGTCACCACTGATTCATACACCCAGTTCTGCAATCTCGTGTCTATAGCCATGAG
ATCGTTTACGTGTGTGCTTAAATAATTTTATGTTATATATACTGCAGAAAACCACGGCTTTTCTTGTATG
TGGTTGGTGTGTTTCTTTTTATTAATAAGCGGCCCTGATCACTGGTCAGGTTCTCAGCTATTGCAGGCTG
CTCCTGTACCTATGTATATCAAAGTGGTGGCGTTTATGTACTCGTGGGTTTCATCTAAAAAAAAAAAAAA

>gi|57506540|dbj|BAD86644.1| dehydrin protein [Daucus carota]
MASYGEGGYGGQKHHGSDEYGNPVRQTDEYGNPVQHTTGGTGMHGTGATTGAHGVGLSTGSDGQPRLNRS
GSSSSSSSEDDGMGGRRKKVGMKQKIKGMLPGGHKEDQQTQTTTPVMGGSYGATGTGEQPEEKKGIMDKI
KDKLPGGHH

>BAD86644 Daucus carota traduite à la main
YLKSFLEFIVFEMASYGEGGYGGQKHHGSDEYGNPVRQTDEYGNPVQHTTGGTGMHGTGA
TTGAHGVGLSTGSDGQPRLNRSGSSSSSSSEDDGMGGRRKKVGMKQKIKGMLPGGHKEDQ
QTQTTTPVMGGSYGATGTGEQPEEKKGIMDKIKDKLPGGHH

===============================================================
Recherche PHI-Blast / PSI-Blast / LEAPDB
===============================================================

Motif segment K : EKKGIMDKIKEKLPG

---------------------------------------------------------------
Exemples de syntaxe de motifs pour LEAPDB
S{8,}       ---> 76 protéines dans LEAPDB
S{8,}(ED)   ---> 32 protéines dans LEAPDB
S{9,}       ---> 35 protéines dans LEAPDB
S{9,}(ED)   ---> 12 protéines dans LEAPDB
S{10,}      ---> 11 protéines dans LEAPDB
S{10,}(ED)  ---> 1 protéines dans LEAPDB
S{11,}      ---> 2 protéines dans LEAPDB dont ABS44866 - SK3 -type dehydrin - Oryza sativa Japonica Group

syntaxe PHI-Blast : E-K-K-G-[IV]-x(2,3)-K-I-K-E-K-L-P-G
EXEMPLES DE RESULTATS AVEC LA Séquence requete : P22239

>gi|118518|sp|P22239.1|DHB_CRAPL RecName: Full=Desiccation-related protein clone PCC6-19; AltName: Full=CDET6-19 MAQFGGEKYGGRHTDEYGNPIQQGAGAHRGGGIMGGGQQAGQHGTTGVLGHGTAGQHGTTGGGLGHGTAG TGGALGGQHRRSGSSSSSSSSESDGEGGRRKKGMKDKMKEKLPGGHGTTTDQQQYGTAATHGQAQQHEKK GIMDKIKEKLPGGQH

==================================
Résultat BLAST
==================================
sp|P22239.1|DHB_CRAPL  RecName: Full=Desiccation-related prote...   291  1e-77
gb|ABO31098.1|  late embryogenesis abundant protein [Lindernia...   109  6e-23
gb|ABC55670.1|  dehydrin DH1a [Coffea canephora]                   81.3  2e-14
gb|ABC55671.1|  dehydrin DH1b [Coffea canephora]                   80.1  5e-14
gb|AAO86690.1|  dehydrin-like protein Dh2 [Boea crassifolia]       78.6  2e-13
emb|CAA66970.1|  dehydrin [Hordeum vulgare subsp. vulgare]         77.4  3e-13
emb|CAA50499.1|  dehydrin 7 [Hordeum vulgare subsp. vulgare]       76.3  8e-13
gb|AAX10963.1|  dehydrin 1 [Hordeum vulgare subsp. spontaneum]...  76.3  9e-13

==================================
Résultat PSI blast Iteration 1
==================================

sp|P22239.1|DHB_CRAPL  RecName: Full=Desiccation-related prote...   291  1e-77
gb|ABO31098.1|  late embryogenesis abundant protein [Lindernia...   109  6e-23
gb|ABC55670.1|  dehydrin DH1a [Coffea canephora]                   81.3  2e-14
gb|ABC55671.1|  dehydrin DH1b [Coffea canephora]                   80.1  5e-14
ref|NP_201441.1|  RAB18 (RESPONSIVE TO ABA 18) [Arabidopsis th...  63.5  4e-09 
gb|AAA32722.1|  glycine rich protein [Arabidopsis thaliana]        63.5  5e-09
emb|CAJ38406.1|  hypothetical protein [Plantago major]             62.8  8e-09
emb|CAA75798.1|  Dhn1 [Solanum commersonii]                        62.4  1e-08
gb|ACG48456.1|  hypothetical protein [Zea mays]                    61.2  2e-08
ref|NP_001136815.1|  hypothetical protein LOC100216961 [Zea ma...  60.8  3e-08 

==================================
Résultat PSI blast Iteration 2
==================================

sp|P22239.1|DHB_CRAPL  RecName: Full=Desiccation-related prote...   145  8e-34
gb|ABO31098.1|  late embryogenesis abundant protein [Lindernia...  75.7  1e-12
gb|ABC55670.1|  dehydrin DH1a [Coffea canephora]                   73.4  6e-12
gb|ABC55671.1|  dehydrin DH1b [Coffea canephora]                   66.0  8e-10
ref|NP_201441.1|  RAB18 (RESPONSIVE TO ABA 18) [Arabidopsis th...  59.1  1e-07 
gb|AAA32722.1|  glycine rich protein [Arabidopsis thaliana]        58.3  2e-07
emb|CAJ38406.1|  hypothetical protein [Plantago major]             54.1  4e-06
gb|AAF01694.1|AF181456_1  dehydrin; DHN6 [Hordeum vulgare]         50.2  6e-05
emb|CAA75798.1|  Dhn1 [Solanum commersonii]                        49.9  6e-05
ref|NP_001032162.1|  RAB18 (RESPONSIVE TO ABA 18) [Arabidopsis...  49.5  8e-05 

==================================
Résultat PSI blast Iteration 3
==================================

sp|P22239.1|DHB_CRAPL  RecName: Full=Desiccation-related prote...   141  2e-32
gb|ABO31098.1|  late embryogenesis abundant protein [Lindernia...  86.5  7e-16
gb|ABC55670.1|  dehydrin DH1a [Coffea canephora]                   81.5  2e-14
gb|ABC55671.1|  dehydrin DH1b [Coffea canephora]                   80.7  3e-14
gb|ABW89487.1|  dehydrin [Hordeum vulgare subsp. vulgare]          62.2  1e-08
gb|AAD02257.1|  dehydrin 6 [Hordeum vulgare]                       62.2  1e-08
gb|AAF01694.1|AF181456_1  dehydrin; DHN6 [Hordeum vulgare]         62.2  1e-08
ref|NP_201441.1|  RAB18 (RESPONSIVE TO ABA 18) [Arabidopsis th...  61.8  2e-08 
gb|AAA32722.1|  glycine rich protein [Arabidopsis thaliana]        61.4  2e-08
emb|CAJ38406.1|  hypothetical protein [Plantago major]             59.1  1e-07

===========================================================
PHI-Blast / Motif segment K : EKKGIMDKIKEKLPG

syntaxe PHI-Blast : E-K-K-G-[IV]-x(2,3)-K-I-K-E-K-L-P-G
===========================================================

Remarque : la page de résultat affiche "PSI blast Iteration n"

==================================
Résultat PSI blast Iteration 1
==================================

sp|P22239.1|DHB_CRAPL  RecName: Full=Desiccation-related prote...   290  5e-86
gb|ABO31098.1|  late embryogenesis abundant protein [Lindernia...   152  2e-44
gb|ABC55670.1|  dehydrin DH1a [Coffea canephora]                    105  2e-30
gb|ABC55671.1|  dehydrin DH1b [Coffea canephora]                    104  5e-30
gb|ABV58322.1|  dehydrin [Avicennia marina]                        95.0  4e-27
gb|ABV58321.1|  dehydrin [Avicennia marina]                        93.8  9e-27
emb|CAA75798.1|  Dhn1 [Solanum commersonii]                        93.4  1e-26
ref|NP_001067844.1|  Os11g0454300 [Oryza sativa (japonica cult...  90.4  9e-26 
dbj|BAD13498.1|  dehydrin [Nicotiana tabacum]                      90.4  9e-26
sp|P12951.1|DHN1_HORVU  RecName: Full=Dehydrin DHN1; AltName: ...  78.9  3e-22

==================================
Résultat PSI blast Iteration 2
==================================

sp|P22239.1|DHB_CRAPL  RecName: Full=Desiccation-related prote...   258  1e-67
gb|ABO31098.1|  late embryogenesis abundant protein [Lindernia...   200   e-50
gb|ABV58322.1|  dehydrin [Avicennia marina]                         187  2e-46
gb|ABC55670.1|  dehydrin DH1a [Coffea canephora]                    185  1e-45
gb|ABV58321.1|  dehydrin [Avicennia marina]                         184  2e-45
gb|ABC55671.1|  dehydrin DH1b [Coffea canephora]                    182  9e-45
dbj|BAD13498.1|  dehydrin [Nicotiana tabacum]                       167  3e-40
ref|NP_001067844.1|  Os11g0454300 [Oryza sativa (japonica cult...   163  3e-39
emb|CAA75798.1|  Dhn1 [Solanum commersonii]                         163  5e-39
emb|CAA58576.1|  dhn1 [Solanum tuberosum]                           154  3e-36

==================================
Résultat PSI blast Iteration 3
==================================

sp|P22239.1|DHB_CRAPL  RecName: Full=Desiccation-related prote...   252  9e-66
gb|ABO31098.1|  late embryogenesis abundant protein [Lindernia...   200  4e-50
dbj|BAD13498.1|  dehydrin [Nicotiana tabacum]                       195  8e-49
gb|ABC55670.1|  dehydrin DH1a [Coffea canephora]                    187  2e-46
gb|ABV58322.1|  dehydrin [Avicennia marina]                         186  4e-46
gb|ABC55671.1|  dehydrin DH1b [Coffea canephora]                    185  1e-45
gb|ABV58321.1|  dehydrin [Avicennia marina]                         183  4e-45
ref|NP_001067844.1|  Os11g0454300 [Oryza sativa (japonica cult...   177  2e-43
emb|CAA75798.1|  Dhn1 [Solanum commersonii]                         177  2e-43
emb|CAA58576.1|  dhn1 [Solanum tuberosum]                           161  2e-38

==========================================================
Mots-clé pour la recherche bibliographique
==========================================================
conserved motif
lysine-rich-K-segment (EKKGIMDKIKEKLPG)
8-serine residue stretch
Y-segment (DEYGNP)
S-segment (serine stretch)

TJ Close : YnSK2 / Kn / KnS / SKn / Y2Kn

L Dure III
GA Galau
EA Bray
DK Hincha
arabidopsis